Having the Jetta shortened probably does effect accuracy, but like maximillian pointed out the program isn't entirely accurate anyway. I could try a bigger bitmap, but for now I'm sticking to the size they recommend. After more messing around with Kammbacks and partial boat tails, I think I'm going to make a boat tail trailer.
One of the reasons I don't like the Kammback idea for this car, is I have a WVO tank in the trunk. Building a Kammback that would hinge out of the way of the trunk lid would be a challenge. I'm in and out of the trunk a lot. A partial boat tail would have similar problems, since I would have to lean over it quite far.
Here is the boat tail trailer movie:
http://www.youtube.com/watch?v=Y-7jmbTLGTI
I like the idea of being able to use it on any smaller car with a trailer hitch too.