Does it crank over evenly? Or does the cranking speed increase and decrease? Uneven cranking is a sign that one or two of teh cylinders have low compression.
I had a machine shop rebuild the cylinder head on my 87 civic and they didn't tighten down the auxiliary valve retainers well enough on several cylinders- so it was cranking funny and missing on that cylinder just a few hours after I fired it up for the first time. If this is the case, eventually it will melt an o-ring that keeps oil from the valve cover area out of the cylinder and then you will burn lots of oil and even foul the spark plugs. A few months later, the same thing happened on a different cylinder, so I went ahead and torqued them all down.
Do a compression check and if those two cylinders are low, then pull off the valve cover and try to wiggle the top of the valve springs of the axillary valves (the little ones on the front of the engine). If they are loose, remove the front rocker arm shaft and use a 13/16 deepwell socket to remove those aux valves (from the top). You will need to extract and turn over the copper sealing washer that the valve seats against. Also inspect the o-ring at the top of the assembly.
Do you have good spark? Can you pull the plug wires off one at a time and isolate which cylinders are missing? Does it run better if you advance the ignition timing? Is the gas exactly halfway up the inspection window on the driver's side of the carb? Might there be water in the gas?
The vacuum advance diaphragm on the distributor is may have a hole in it.
If you think there may be more bad vacuum hoses, a last resort may be to do a devac (removal of 90% of the vacuum hoses)
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